Well ... That does seem to be the consensus everywhere I ask. I guess I will pull out one of the channels that is working moderately ok and clean the crap out of the switches. I have already cleaned them once, but maybe they are just that gunked up. I cleaned them all except for the matrix switches. These seem to be trickier to clean and I think they are outside of the signal path I am testing (or?).
Can the switches for the matrix cause problems like this? I get distortion like you get from dirty switches. I will also lose the signal and it only pops back on when I increase the gain or drive the signal before the input. If I let it sit it a short while it will drop out again until a strong enough signal is applied. I use the routing matrix to go to my AD and always thought they lived outside of the signal path I am testing ( through the channel to the Mix Bus). I have all EQ's, Compressors and other routing disabled, however, many of the comps/ EQ's still have scratchy switches even after a good cleaning. These are going to be the 1st ones I re-soak with contact cleaner and give another good work out.
I appreciate all of your advice and help. I just hope this issue isn't more serious than some stubborn dirt or other easily remedied problem.